Citing Mustguseal


Mustguseal is a bioinformatic protocol - designed to build alignments of protein families and superfamilies, and a platform - a server implementing the original and third-party algorithms to provide a user-friendly web-based interface to the Mustguseal protocol through the World Wide Web.

If you find Mustguseal or its results useful please cite our work as well as the third-party contributors.



The following citation of the Mustguseal protocol and server is encouraged:

The multiple alignment was build using the Mustguseal protocol and server [1] which implements a combination of sequence [2-5] and structure [6-7] search and alignment techniques

[1] Suplatov D., Kopylov K., et al. Mustguseal: Server for Multiple Structure-Guided Sequence Alignments of Protein Families, submitted

[2] Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular biology and evolution, 30(4), 772-780.
[3] Vouzis, P. D., & Sahinidis, N. V. (2011). GPU-BLAST: using graphics processors to accelerate protein sequence alignment. Bioinformatics, 27(2), 182-188.
[3] Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic acids research, 25(17), 3389-3402.
[4] Fu, L., Niu, B., Zhu, Z., Wu, S., & Li, W. (2012). CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics, 28(23), 3150-3152.
[5] Söding, J., Biegert, A., & Lupas, A. N. (2005). The HHpred interactive server for protein homology detection and structure prediction . Nucleic acids research, 33(suppl 2), W244-W248.
[6] Menke, M., Berger, B., & Cowen, L. (2008). Matt: local flexibility aids protein multiple structure alignment. PLoS Comput Biol, 4(1), e10.
[7] Krissinel, E., & Henrick, K. (2004). Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallographica Section D: Biological Crystallography, 60(12), 2256-2268.



In addition, if you used the interactive content at the Analysis section of Results page and found it useful please cite:

[8] Gille, C., Fähling, M., Weyand, B., Wieland, T., & Gille, A. (2014). Alignment-Annotator web server: rendering and annotating sequence alignments. Nucleic acids research, 42: W3-6.
[9] Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T., & Sussman, J. L. (2013). JSmol and the Next‐Generation Web‐Based Representation of 3D Molecular Structure as Applied to Proteopedia. Israel Journal of Chemistry, 53(3‐4), 207-216.
[10] PyMol: A molecular visualization system. http://pymol.org/, Copyright (C) Schrodinger, LLC