Citing Yosshi

If you find the Yosshi+Mustguseal tool or its results useful please cite:

Suplatov D.A., Timonina D.S., Sharapova Y.A., Švedas V.K. (2019) Yosshi: a web-server for disulfide engineering by bioinformatic analysis of diverse protein families. Nucleic Acids Res., 47(W1), W308–W314. DOI:10.1093/nar/gkz385

Suplatov D.A., Kopylov K.E., Popova N.N., Voevodin V.V., Švedas V.K. (2018) Mustguseal: a Server for Multiple Structure-Guided Sequence Alignment of
Protein Families. Bioinformatics, 34(9), 1583-1585. DOI: 10.1093/bioinformatics/btx831.

Please also cite the work of third-party contributors, whose programs and algorithms are currently implemented in the Yosshi web-server:

MAFFT program is implemented to compare the sequence of the representative PDB with the multiple sequence alignment: Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol., 30(4), 772-780

PyMol program is implemented to compile the binary PSE session with the annotated representative structure: PyMol: A molecular visualization system. http://pymol.org/, Copyright (C) Schrodinger, LLC

JSmol program is implemented to provide the HTML5-based tool for the on-line analysis of Yosshi results: Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T., & Sussman, J. L. (2013). JSmol and the Next‐Generation Web‐Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr J Chem., 53(3‐4), 207-216.